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Integrated approach for increasing breeding efficiency in fruit tree crops

Project
Fruit Breedomics has as its strategic goal to improve the efficiency of fruit breeding by bridging the gap between scientific genetics research and application in breeding.
Fruit Breedomics takes a multidisciplinary approach, including genetics, genomics, ecophysiology and bioinformatics, to improve the efficiency apple and peach breeding programmes by:
i) developing new and adapted tools,
ii) studying a wide range of traits to enlarge the coverage of selection criteria,
iii) analysing and exploiting the wide genetic diversity available,
iv) making the research outputs (valuable traits, genetic markers and genes, innovative tools and methodologies, new plant material) directly applicable for the breeders,
v) establishing a stakeholder network.

Fruit Breedomics will provide the European fruit tree sector with cutting-edge breeding tools to improve selection efficiency as well as superior pre-breeding material to meet grower and consumer demands for healthy cultivars of high quality that can be grown in sustainable agriculture systems in the context of climate change. The project will develop tailored molecular and bioinformatics tools to extensively exploit the diversity present in European germplasm collections and breeding populations. This will lead to the selection of desired favourable genes needed for improvement of main horticultural traits. The collected data will provide precious genetic information on the pool of genitors and founders to be used in future breeding programmes.

The project will focus primarily on apple and peach, two major fruits in Europe, but many tools and much knowledge gained will also be of benefit to other species of the Rosaceae family via the strong ancestral relatedness among these species.
  • Overview
  • Publications

Overview

Type

7PQCP-CSA - 7 Programma Quadro_Collaborative Project/Network/Coordination and Support Action

Funder

EUROPEAN COMMISSION
External Organization Funding Organization

Date/time interval

March 1, 2011 - August 31, 2015

Project duration

54 months

Publications

Outputs (15)

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  • Abstract
  • Academic Article
Development and Evaluation of a 9K SNP Addition to the Peach Ipsc 9K SNP Array v1 
HORTSCIENCE
AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE
2019
Abstract
Open Access
The multi-site PeachRefPop collection : a true cultural heritage and international scientific tool for fruit trees 
PLANT PHYSIOLOGY
OXFORD UNIVERSITY PRESS ON BEHALF OF AMERICAN SOCIETY OF PLANT BIOLOGISTS
2020
Academic Article
Open Access
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An integrated approach for increasing breeding efficiency in apple and peach in Europe 
HORTICULTURE RESEARCH
2018
Academic Article
Open Access
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Deletion of the miR172 target site in a TOE-type gene is a strong candidate variant for dominant double-flower trait in Rosaceae 
PLANT JOURNAL
WILEY BLACKWELL PUBLISHING
2018
Academic Article
Open Access
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Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch) 
BMC PLANT BIOLOGY
BIOMED CENTRAL
2018
Academic Article
Open Access
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Linkage and association mapping for the slow softening (SwS) trait in peach (P. persica L. Batsch) fruit 
TREE GENETICS & GENOMES
SPRINGER
2018
Academic Article
Reserved Access
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Discovering peach QTLs with multiple progeny analysis 
ACTA HORTICULTURAE
INTERNATIONAL SOCIETY FOR HORTICULTURAL SCIENCE
2017
Academic Article
Reserved Access
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Exploring and exploiting phenotypic and genetic diversity in peach : identification of major genes and QTLs by GWAS 
ACTA HORTICULTURAE
INTERNATIONAL SOCIETY FOR HORTICULTURAL SCIENCE
2017
Academic Article
Reserved Access
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FruitBreedomics phenotypes and genotypes database and tools 
ACTA HORTICULTURAE
INTERNATIONAL SOCIETY FOR HORTICULTURAL SCIENCE
2017
Academic Article
Reserved Access
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Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch) 
BMC PLANT BIOLOGY
BIOMED CENTRAL
2017
Academic Article
Open Access
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Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies 
BMC GENOMICS
BIOMED CENTRAL
2017
Academic Article
Open Access
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Integrated QTL detection for key breeding traits in multiple peach progenies 
BMC GENOMICS
BIOMED CENTRAL
2017
Academic Article
Open Access
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Sugars in peach fruit: a breeding perspective 
HORTICULTURE RESEARCH
NATURE PUBLISHING GROUP
2016
Academic Article
Open Access
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QTL mapping for brown rot (Monilinia fructigena) resistance in an intraspecific peach (Prunus persica L. Batsch) F1 progeny 
TREE GENETICS & GENOMES
SPRINGER
2014
Academic Article
Open Access
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Genetic dissection of aroma volatile compounds from the essential oil of peach fruit : QTL analysis and identification of candidate genes using dense SNP maps 
TREE GENETICS & GENOMES
SPRINGER
2013
Academic Article
Open Access
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