Data di Pubblicazione:
2023
Citazione:
Vibrational spectroscopy simulation of solvation effects on a G-quadruplex / D. Moscato, F. Gabas, R. Conte, M. Ceotto. - In: JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS. - ISSN 1538-0254. - 41:23(2023), pp. 14248-14258. [10.1080/07391102.2023.2180435]
Abstract:
It is commonly believed that solvation effects on the vibrational properties of a solute are easily accounted for by simple rules of thumbs, that is, solvating a polar molecule in a polar medium has the only effect of red shifting all its spectroscopical features and, similarly, solvating a polar molecule in a nonpolar medium has the opposite effect. In this work, we use theoretical vibrational spectroscopy at quasi-classical and quantum approximate semiclassical level to gain atomistic insights about solvent-solute interactions for 2'-deoxyguanosine and the G-quadruplex. We employ the quasi-classical trajectory method to include full anharmonicity into our calculated spectra, and then introduce quantum nuclear effects by means of divide-and-conquer semiclassical spectroscopy calculations. Solvation is treated explicitly leading to a good reproducibility of the available experimental data and reliable predictions when an experimental reference is missing.
Tipologia IRIS:
01 - Articolo su periodico
Keywords:
G-quadruplex; Vibrational spectroscopy; semiclassical
Elenco autori:
D. Moscato, F. Gabas, R. Conte, M. Ceotto
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