Genome-Wide Identification and Spatial Expression Analysis of Histone Modification Gene Families in the Rubber Dandelion Taraxacum kok-saghyz
Articolo
Data di Pubblicazione:
2022
Citazione:
Genome-Wide Identification and Spatial Expression Analysis of Histone Modification Gene Families in the Rubber Dandelion Taraxacum kok-saghyz / F. Panara, C. Fasano, L. Lopez, A. Porceddu, P. Facella, E. Fantini, L. Daddiego, G. Perrella. - In: PLANTS. - ISSN 2223-7747. - 11:16(2022), pp. 2077.1-2077.19. [10.3390/plants11162077]
Abstract:
Taraxacum kok-saghyz (Tks), also known as the Russian dandelion, is a recognized alternative
source of natural rubber quite comparable, for quality and use, to the one obtained from the so-
called rubber tree, Hevea brasiliensis. In addition to that, Tks roots produce several other compounds,
including inulin, whose use in pharmaceutical and dietary products is quite extensive. Histone-
modifying genes (HMGs) catalyze a series of post-translational modifications that affect chromatin
organization and conformation, which, in turn, regulate many downstream processes, including gene
expression. In this study, we present the first analysis of HMGs in Tks. Altogether, we identified
154 putative Tks homologs: 60 HMTs, 34 HDMs, 42 HATs, and 18 HDACs. Interestingly, whilst
most of the classes showed similar numbers in other plant species, including M. truncatula and
A. thaliana, HATs and HMT-PRMTs were indeed more abundant in Tks. Composition and structure
analysis of Tks HMG proteins showed, for some classes, the presence of novel domains, suggesting a
divergence from the canonical HMG model. The analysis of publicly available transcriptome datasets,
combined with spatial expression of different developmental tissues, allowed us to identify several
HMGs with a putative role in metabolite biosynthesis. Overall, our work describes HMG genomic
organization and sets the premises for the functional characterization of epigenetic modifications in
rubber-producing plants.
Tipologia IRIS:
01 - Articolo su periodico
Keywords:
histone modification; gene expression; Taraxacum kok-saghyz; natural rubber
Elenco autori:
F. Panara, C. Fasano, L. Lopez, A. Porceddu, P. Facella, E. Fantini, L. Daddiego, G. Perrella
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