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Modeling the heart across the scales: from cardiac cells to the whole organ

Project
This project has the ambition to set up a mathematical research platform for the simulation of the heart function. The aim is to deliver a variety of mathematical tools that can successfully fulfill the requests made by clinical specialists on classes of pathological cardiac dysfunctions. For that we will develop physics-based numerical models that are accurate, computationally efficient, and suitable to treat the intra-patients variability. From a mathematical perspective, this project addresses new and tremendously challenging problems that are concerned with physical models involving interactions of multiple scales in space and time, as well as the corresponding numerical treatment of coupled systems of nonlinear time-dependent partial differential equations (PDEs). We are committed to use mathematical models that are appropriate to describe the heart function, by coupling electro-mechanics and fluid dynamics processes, especially in those pathological situations that provide a continuous inspiration for our research. A central endeavor will consist in the realization of high-order numerical methods that make the approximate solution of the afore-mentioned mathematical models computationally feasible, efficient, numerically accurate, and scalable on parallel HPC architectures. Although this mathematical platform can be potentially exploited in a broad variety of situations and applications in science and industry, we will nonetheless stay focused on the cardiac context. The aim is to provide our clinical partners with reliable results to enhance physiological understanding of heart function, support medical decisions, and improve therapeutic treatments. In particular, we will address two pathological scenarios, with high morbidity in the population, which are related to the processes of electric wave propagation and cardiac perfusion: a) the dysfunctional wave propagation originated by electrical anomalies in the atrial and ventricular conduction systems, i.e cardiac arrhythmias such as tachycardia and fibrillation; b) the effect of ischemia, a reduction of blood supply to the myocardial tissues, in terms of blood perfusion downstream the coronaries and cardiac output such as the ejection fraction (the quantity of blood ejected from the left ventricle). These pathologies are still relatively little understood because of their intrinsic complexity. It is our belief that a sound mathematical investigation, supported by extensive information supplied by the computational results, may unveil emergent patterns and unexpected correlations that are key for the cardiac patho-physiology. In particular our landmark contributions will be: 1) The development of biophysically detailed membrane and excitation-contraction models for the electro-mechanical activity of cardiac myocytes and their integration in macroscopic 3D models for healthy and pathological cardiac tissue; 2) The construction of models that are suitable to simulate the heart perfusion based on the geometric multiscale description of the vascular tree; 3) The development of high-order numerical methods in space (spectral elements, isogeometric analysis, hp-fem) and time (splitting techniques and implicit-explicit schemes) for cardiac PDE models; 4) The development of scalable domain decomposition preconditioners (like BDDC and Parareal), which will enable the efficient solution of cardiac PDE models defined in complex subject-specific geometries; 5) The quantification of uncertainty (UQ) for the solution of forward and inverse problems due to uncertain coefficients and data. Forward UQ problems aim at exploring the impact of intra-patients variability on outcomes of clinical interest; inverse UQ problems are instead related with parameters estimation and model calibration based on patients; 6) The set-up of statistical learning inspired algorithms that allow the exploration of large databases related to geometrical, biological and functional data characterizing e
  • Academic Signature
  • Overview
  • Research Areas
  • Publications

Academic Signature

Il servizio di classificazione ACADEMIC SIGNATURE è IN BETA TESTING e i risultati potrebbero non essere corretti

Academic Signature (8)

Coronary Circulation
Blood Circulation
Myocardial Perfusion Imaging
Cardiac Imaging Techniques
Anti-Arrhythmia Agents
Cardiovascular Agents
Arrhythmias, Cardiac
Heart Diseases
Myocardial Perfusion Imaging
Heart Function Tests
Arrhythmias, Cardiac
Pathologic Processes
Ischemia
Pathologic Processes
Myocardial Perfusion Imaging
Perfusion Imaging

Overview

Contributors

SCACCHI SIMONE   Scientific Manager  

Departments involved

Dipartimento di Matematica Federigo Enriques   Principale  

Type

PRIN2017 - PRIN bando 2017

Funder

MINISTERO DELL'ISTRUZIONE E DEL MERITO
External Organization Funding Organization

Date/time interval

August 19, 2019 - August 18, 2022

Project duration

36 months

Research Areas

Concepts


Settore MAT/08 - Analisi Numerica

Publications

Outputs (7)

A comparison of Algebraic Multigrid Bidomain solvers on hybrid CPU–GPU architectures 
COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING
ELSEVIER
2024
Academic Article
Open Access
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The role of computational methods in cardiovascular medicine: a narrative review 
TRANSLATIONAL PEDIATRICS
AME PUBLISHING COMPANY
2024
Academic Article
Open Access
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A comparative study of scalable multilevel preconditioners for cardiac mechanics 
JOURNAL OF COMPUTATIONAL PHYSICS
ELSEVIER
2023
Academic Article
Reserved Access
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PARALLEL NEWTON-KRYLOV BDDC AND FETI-DP DELUXE SOLVERS FOR IMPLICIT TIME DISCRETIZATIONS OF THE CARDIAC BIDOMAIN EQUATIONS 
SIAM JOURNAL ON SCIENTIFIC COMPUTING
SOCIETY FOR INDUSTRIAL AND APPLIED MATHEMATICS
2022
Academic Article
Open Access
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Parallel inexact Newton–Krylov and quasi-Newton solvers for nonlinear elasticity 
COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING
ELSEVIER
2022
Academic Article
Partially Open Access
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Role of scar and border zone geometry on the genesis and maintenance of re-entrant ventricular tachycardia in patients with previous myocardial infarction 
FRONTIERS IN PHYSIOLOGY
FRONTIERS MEDIA
2022
Academic Article
Open Access
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Wall Shear Stress Topological Skeleton Independently Predicts Long-Term Restenosis After Carotid Bifurcation Endarterectomy 
ANNALS OF BIOMEDICAL ENGINEERING
SPRINGER
2020
Academic Article
Open Access
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