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  1. Attività

EXaSCale smArt pLatform Against paThogEns for Corona Virus (EXSCALATE4CoV)

Progetto
The EXSCALATE4CoV (E4C) project aims to exploit the most powerful computing resources currently based in Europe to empower smart in-silico drug design. Advanced Computer-Aided Drug Design (CADD) in combination with the high throughput biochemical and phenotypic screening will allow the rapid evaluation of the simulations results and the reduction of time for the discovery of new drugs. Against a pandemic crisis, the immediate identification of effective treatments have a paramount importance. First, E4C will select through the EXSCALATE platform, the most promising commercialized and developing drugs safe in man. Second, select from >500 billion molecules new pan coronavirus inhibitors. The huge computational resource, therefore the activities will be supported and empowered by three of the most powerful computer centers in Europe: CINECA, BSC and JÜLICH. The Swiss Institute of Bioinformatics (SIB) will provide the homology 3D models for the viral proteins. The Fraunhofer IME will provide the BROAD Repurposing Library and biochemical assays. Phenotypic screenings will be run by KU LUEVEN to identify molecules capable of blocking virus replication in in vitro models. IIMCB and ELECTRA will determine the crystal structure of at least one coronavirus functional proteins to evaluate the structural similarities with other viral proteins. EXSCALATE4CoV consortium will identify safe in man drugs repurposed as 2019-nCoV antiviral and will propose to the EMA innovation task force (ITF) to define a preliminary development strategy and a proposal for a registration path. The E4C project will share promptly its scientific outcomes with the research community by using established channels: ChEMBL portal for the biochemical data, the SWISS-MODEL portal for the homology models of viral proteins WT and mutants, the Protein Data Bank for the experimentally resolved protein structures, the EUDAT for the data generated by in-silico simulations and the E4C project website.
  • Dati Generali
  • Aree Di Ricerca
  • Pubblicazioni

Dati Generali

Partecipanti

VISTOLI GIULIO   Responsabile scientifico  

Dipartimenti coinvolti

Dipartimento di Scienze Farmaceutiche   Principale  

Tipo

H20_RIA - Horizon 2020_Research & Innovation Action/Innovation Action

Finanziatore

EUROPEAN COMMISSION
Organizzazione Esterna Ente Finanziatore

Capofila

DOMPE' FARMACEUTICI S.P.A. CON SOCIO UNICO

Periodo di attività

Aprile 1, 2020 - Settembre 30, 2021

Durata progetto

18 mesi

Aree Di Ricerca

Settori


Settore CHIM/08 - Chimica Farmaceutica

Pubblicazioni

Pubblicazioni (5)

Novel Method for Prioritizing Protein Binding Sites Using Pocket Analysis and MD Simulations 
HELIYON
ELSEVIER
2025
Articolo
Open Access
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Target Prediction by Multiple Virtual Screenings: Analyzing the SARS-CoV-2 Phenotypic Screening by the Docking Simulations Submitted to the MEDIATE Initiative 
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
MDPI
2024
Articolo
Open Access
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MEDIATE - Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions 
EXPERT OPINION ON DRUG DISCOVERY
ROUTLEDGE TAYLOR & FRANCIS GROUP
2023
Articolo
Open Access
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Combining Different Docking Engines and Consensus Strategies to Design and Validate Optimized Virtual Screening Protocols for the SARS-CoV-2 3CL Protease 
MOLECULES
MDPI
2021
Articolo
Open Access
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A comprehensive mapping of the druggable cavities within the SARS-CoV-2 therapeutically relevant proteins by combining pocket and docking searches as implemented in pockets 2.0 
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
MDPI
2020
Articolo
Open Access
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Realizzato con VIVO | Progettato da Cineca | 25.12.3.0